Vardazaryan N, Adunts L, Bazukyan I, Zakharyan M, Liu H, Melkonian C, Nersisyan L. A network-based meta-analysis of the honeybee gut microbiome: geographic, seasonal, and pesticide-associated shifts. Sci Rep. 2026
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Konecny T, Zadirako N, Grigoryan A, Tamazyan M, Mnatsakanyan S, Stepanyan L, Loeffler-Wirth H, Bourdelais S, Mednick G, Delepine C, Chand D, Binder H Transcriptomic profiling identifies immunotherapy-responsive phenotypes in microsatellite-stable metastatic colorectal cancer. Oncogene, 2026.
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Konecny T, Binder H, Hampel U, Hansmann F, Pfannkuche H, Schneider MR. Spotting a unicorn: spatial transcriptome analysis of the eyelid reveals gene regulatory networks enriched in Moll glands. Briefings in Bioinformatics, 2026.
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Baloyan A, Konecny T, Hovhannisyan E, Zadirako N, Nikoghosyan M, Binder H. A topological map of the genetic components of grapevine—Admixture meets SOMmelier machine learning. PLOS Computational Biology, 2026.
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Nikoghosyan M, Hovhannisyan E, Zadirako N, Duan S, Asatryan A, Arakelyan A, Margaryan K, Baloyan A, Konecny T, Binder H. Population structure of wild and cultivated grapevines in Armenia. BMC Plant Biology, 2026.
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Liu H, Huch S, Hull R, Garcia FR, Nersisyan L, Yin X, Chen WH, Du J, Pelechano V. A streamlined, nanopore-compatible 5PSeq protocol for rapid phenotypic antimicrobial sensitivity testing. Cell Rep Methods. 2026.
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Konecny T, Asatryan A, Binder H. Annual transcriptomic trajectory of grapevine buds reveals the coordinated regulation of thiamine and stilbenoid biosynthesis during winter dormancy. BMC Plant Biology, 2026
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Gouka L, Serra i Melendez C, Vardazaryan N. et al. Genomic insights into adaptative traits of phyllosphere yeasts. Environmental Microbiome, 2026

Borisov N, Ilnytsky Y, Byeon B, Kovalchuk O, Kovalchuk I. Multi-omics data integration for topology-based pathway activation assessment and personalized drug ranking. Molecular Omics, 2025
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Binder H, Hampel U, Loeffler-Wirth H, Hansmann F, Pfannkuche H, Schmidt M, Schneider MR. Spatial transcriptome analysis of the human eyelid depicts meibomian gland cell differentiation: A pilot study. Physiological Reports, 2025
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Schmidt M, Binder H, Schneider MR. The metabolic underpinnings of sebaceous lipogenesis. Communications Biology, 2025
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Konecny T, Asatryan A, Binder H. Responding to Stress: Diversity and Resilience of Grapevine in a Changing Climate Under the Perspective of Omics Research. International Journal of Molecular Sciences, 2025
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Hakobyan S, Schmidt M, Binder H, Arakelyan A. Topology-aware pathway analysis of spatial transcriptomics. PeerJ, 2025
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Hakobyan M, Binder H, Arakelyan A. Telomere Maintenance Pathways in Lower-Grade Gliomas: Insights from Genetic Subtypes and Telomere Length Dynamics. International Journal of Molecular Sciences, 2025
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Jalatyan T, Aznauryan E, Hasan R, Vardanyan V, Nersisyan S, Thompson DB, Davidsohn N, Thomas S, van Haren S, Tam J, Milanova D, Church GM, Nersisyan L. hafoe: an interactive tool for the analysis of chimeric AAV libraries after random mutagenesis. Gene Therapy, 2025
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Zhang Y, Nersisyan L, Fürst E, Alexopoulos I, Santolaria C, Huch S, Bassot C, Garre E, Sunnerhagen P, Piazza I, Pelechano V. Ribosomes modulate transcriptome abundance via generalized frameshift and out-of-frame mRNA decay. Molecular Cell, 2025
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Arakelyan A, Sirunyan T, Khachatryan G, Hakobyan S, Minasyan A, Nikoghosyan M, Hakobyan M, Chavushyan A, Martirosyan G, Hakobyan Y, Binder H. Assigning Transcriptomic Subtypes to Chronic Lymphocytic Leukemia Samples Using Nanopore RNA-Sequencing and Self-Organizing Maps. Cancers (Basel), 2025
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Ghukasyan L, Khachatryan G, Sirunyan T, Minasyan A, Hakobyan S, Chavushyan A, Hayrapetyan V, Ghazaryan H, Martirosyan G, Mkrtchyan G, Vardanyan V, Mukuchyan V, Davidyants A, Zakharyan R, Arakelyan A. Genewise detection of variants in MEFV gene using nanopore sequencing. Frontiers in Genetics, 2024
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Wahis J, Akkaya C, Kirunda AM, Mak A, Zeise K, Verhaert J, Gasparyan H, Hovhannisyan S, Holt MG. The astrocyte α1A-adrenoreceptor is a key component of the neuromodulatory system in mouse visual cortex. Glia, 2024
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Martirosyan A, Ansari R, Pestana F, Hebestreit K, Gasparyan H, Aleksanyan R, Hnatova S, Poovathingal S, Marneffe C, Thal DR, Kottick A, Hanson-Smith VJ, Guelfi S, Plumbly W, Belgard TG, Metzakopian E, Holt MG. Unravelling cell type-specific responses to Parkinson’s Disease at single cell resolution․ Molecular Neurodegeneration, 2024
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Bielefeld P, Martirosyan A, Martín-Suárez S, Apresyan A, Meerhoff GF, Pestana F, Poovathingal S, Reijner N, Koning W, Clement RA, Van der Veen I, Toledo EM, Polzer O, Durá I, Hovhannisyan S, Nilges BS, Bogdoll A, Kashikar ND, Lucassen PJ, Belgard TG, Encinas JM, Holt MG, Fitzsimons CP. Traumatic brain injury promotes neurogenesis at the cost of astrogliogenesis in the adult hippocampus of male mice. Nature Communications, 2024
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Turnbull K, Paternoga H, von der Weth E, Egorov AA, Pochopien AA, Zhang Y, et al. The ABCF ATPase New1 resolves translation termination defects associated with specific tRNAArg and tRNALys isoacceptors in the P site. Nucleic Acids Research, 2024
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Davitavyan S, Martirosyan G, Mkrtchyan G, Chavushyan A, Melkonyan A, Ghazaryan H, Binder H, Arakelyan A: Integrated analysis of -omic landscapes in breast cancer subtypes. F1000Research, 2024
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Hakobyan A, Meyenberg M, Vardazaryan N, Hancock J, Vulliard L, Loizou JI, et al. Pan-cancer analysis of the interplay between mutational signatures and cellular signaling. iScience, 2024
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Konecny T, Asatryan A, Nikoghosyan M, Binder H. Unveiling Iso- and Aniso-Hydric Disparities in Grapevine—A Reanalysis by Transcriptome Portrayal Machine Learning. Plants, 2024
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Dong Y, Duan S, Xia Q, Liang Z, Dong X, Margaryan K, Musayev M, Goryslavets S, Zdunić G, Bert PF, Lacombe T, Maul E, Nick P, Bitskinashvili K, Bisztray GD, Drori E, De Lorenzis G, Cunha J, Popescu CF, Arroyo-Garcia R, Arnold C, Ergül A, Zhu Y, Ma C, Wang S, Liu S, Tang L, Wang C, Li D, Pan Y, Li J, Yang L, Li X, Xiang G, Yang Z, Chen B, Dai Z, Wang Y, Arakelyan A, et al. Dual domestications and origin of traits in grapevine evolution. Science, 2023
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